INNAMES |
'' |
none |
Input names. Used for ssm models |
OUTNAMES |
'' |
none |
Output names. Used for ssm models |
MODEL |
'' |
none |
Model to fit. |
FITPARAMS |
[] |
none |
A cell array of evaluated parameters. |
DW |
0 |
|
Used for ssm models. If the user wants to estimate w1 and w12 instead of w1 and w2, then in the plist field 'FitParams' instead of 'EOM_TM2_STIFF_XX' has to type 'EOM_DELTA_STIFF_XX' and input a the corresponding initial value and covariance matrix. Still under test. |
INPUT |
'' |
none |
A matrix array of input signals. |
N |
1000 |
none |
number of samples of the chain. |
COV |
0.0001 |
none |
covariance of the gaussian jumping distribution. |
NOISE |
'' |
none |
A matrix array of noise spectrum (PSD) used to compute the likelihood. |
MODELFREQDEPENDENT |
1 |
|
Set to true to use frequency dependent s models, set to false when using constant models |
SEARCH |
1 |
|
Set to true to use bigger jumps in parameter space during annealing and cool down. |
FREQUENCIES |
[] |
none |
Range of frequencies where the analysis is performed. If an array, only first and last are used |
FSOUT |
[] |
none |
Desired sampling frequency to resample the input time series |
SIMPLEX |
1 |
|
Set to true to perform a simplex search to find the starting parameters of the MCMC chain. |
MHSAMPLE |
1 |
|
Set to true to perform a mhsample search. This is set to true by default. Only to be set to false by the user if we does not want to perform the mcmc search |
HEAT |
1 |
none |
The heat index flattening likelihood surface during annealing. |
TC |
'' |
none |
An array of two values setting the initial and final value for the cooling down. |
X0 |
[] |
none |
The proposed initial values. |
JUMPS |
[] |
none |
An array of four numbers setting the rescaling of the covariance matrix during the search phase. |
PLOT |
[] |
none |
Select indexes of the parameters to be plotted. |
DEBUG |
0 |
|
Set to true to get debug information of the MCMC process. |
INMODEL |
'' |
none |
Input model. Still under test |
NAVS |
1 |
none |
The number of averages to use when calculating PSD and CPSD. |
OUTMODEL |
'' |
none |
Output model. Still under test |
PRIOR |
'' |
none |
Mean, sigma and normalization factor for priors. Still under test |
ANNEAL |
'simul' |
|
Choose type of annealing during sampling. Default value is simulated annealing. Choose "thermo" for annealing with a thermostat. SNR is computed and if it is larger than a fixed value SNR0 (provided also in the plist), then the chains are heated by a factor of (SNR(1)/SNR0)^2. Choosing "simple" the deviation of the loglikelihood of every 10 points in the chains is stored. If this deviation is larger or smaller than two fixed values the chains are cooled or heated respectively. |
SNR0 |
200 |
none |
Fixed value for thermostated annealing. |
DELTAL |
[100 600 2 3] |
none |
Deviation of Loglikelihood for 10 points of the chains. Used forthe "simple" choice of annealing with a thermostat. |