Method pest/pest


  PEST constructor for parameter estimates (pest) class.
 %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
 
  DESCRIPTION: PEST constructor for parameter estimates (pest) class.
 
  CONSTRUCTOR:
 
        pe = pest()
        pe = pest(filename)
        pe = pest(plist-object)
        pe = pest(y, paramNames)
        pe = pest(y, paramNames, dy)
        pe = pest(y, paramNames, dy, cov)
        pe = pest(y, paramNames, dy, cov, chi2)
        pe = pest(y, paramNames, dy, cov, chi2, dof)
 
  INPUTS:
 
        y          - best fit parameters
        paramNames - names of the parameters
        dy         - standard errors of the parameters
        cov        - covariance matrix of the parameters
        chi2       - reduced chi^2 of the final fit
        dof        - degrees of freedom
 
  Parameters Description
 
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Method Details
Access public
Defining Class pest
Sealed 0
Static 0

Parameter Description

Default

no description
Key Default Value Options Description
ltpda_uoh.addGlobalKeys
NAME '' none The name of the constructed object.
DESCRIPTION '' none The description of the constructed object.

Example

plist('NAME', '', 'DESCRIPTION', '')

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From MAT File

no description
Key Default Value Options Description
ltpda_uoh.addGlobalKeys
NAME '' none The name of the constructed object.
DESCRIPTION '' none The description of the constructed object.
ltpda_uo.buildplist
FILENAME '' none MAT filename.

Example

plist('NAME', '', 'DESCRIPTION', '', 'FILENAME', '')

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From XML File

no description
Key Default Value Options Description
ltpda_uoh.addGlobalKeys
NAME '' none The name of the constructed object.
DESCRIPTION '' none The description of the constructed object.
ltpda_uo.buildplist
FILENAME '' none XML filename.

Example

plist('NAME', '', 'DESCRIPTION', '', 'FILENAME', '')

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From Repository

no description
Key Default Value Options Description
ltpda_uoh.addGlobalKeys
NAME '' none The name of the constructed object.
DESCRIPTION '' none The description of the constructed object.
ltpda_uo.buildplist
HOSTNAME '' none Database server hostname.
DATABASE '' none Database name.
USERNAME '' none User name to use when connecting to the database. Leave blank to be prompted.
PASSWORD {} [0x0] none Password to use when connecting to the database. Leave blank to be prompted.
CONN [] none Java mysql object.
ID, IDS [] none A vector of object IDs.
CID [] none A vector of collection IDs.
UUID, UUIDS {} [0x0] none A cell array of UUIDs.
BINARY 1
  • 1
  • 0
Use binary representation (not always available).

Example

plist('NAME', '', 'DESCRIPTION', '', 'HOSTNAME', '', 'DATABASE', '', 'USERNAME', '', 'PASSWORD', cell(0,0), 'CONN', [[]], 'ID', [[]], 'CID', [[]], 'UUID', cell(0,0), 'BINARY', [true])

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From Built-in Model

no description
Key Default Value Options Description
ltpda_uoh.addGlobalKeys
NAME '' none The name of the constructed object.
DESCRIPTION '' none The description of the constructed object.
ltpda_uo.buildplist
BUILT-IN '' none Choose one of the built-in models. (use class.getBuiltInModels to get a list for a particular user class)
VERSION [] none Version of the built in model. The default version is used for the case that no 'Version' is defined.

Example

plist('NAME', '', 'DESCRIPTION', '', 'BUILT-IN', '', 'VERSION', [[]])

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From Values

no description
Key Default Value Options Description
ltpda_uoh.addGlobalKeys
NAME '' none The name of the constructed object.
DESCRIPTION '' none The description of the constructed object.
pest.buildplist
Y [] none Best fit parameters
PARAMNAMES, NAMES, PARAMS {} [0x0] none Names of the parameters
DY [] none Standard errors of the parameters
COV [] none Covariance matrix of the parameters
CORR [] none Correlation matrix of the parameters
CHI2 [] none Reduced chi^2 of the final fit
CHAIN [] none Monte carlo markov chain
DOF [] none Degrees of freedom
MODELS smodel() none Models used for the fit in which the coefficients were calculated
Please notice that the models need to be stored in a smodel object!
PDF [] none Probability density function, as output by MCMC methods
YUNITS {} [0x0] none A cell-array of units for the parameters.

Example

plist('NAME', '', 'DESCRIPTION', '', 'Y', [[]], 'PARAMNAMES', cell(0,0), 'DY', [[]], 'COV', [[]], 'CORR', [[]], 'CHI2', [[]], 'CHAIN', [[]], 'DOF', [[]], 'MODELS', smodel([plist('NAME', '', 'DESCRIPTION', '')]), 'PDF', [[]], 'YUNITS', cell(0,0))

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Some information of the method pest/pest are listed below:
Class name pest
Method name pest
Category Constructor
Package name ltpda
VCS Version 967b0eec0dece803a81af8ef54ad2f8c784b20b2
Min input args 0
Max input args -1
Min output args 1
Max output args 1
Can be used as modifier 0
Supported numeric types {'double'}




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