CHAINS |
[] |
none |
Insert an array containing the parameters to plot. If left empty,then by default will plot the chains of every parameter. If set to zero then no chains are plotted. (note: The loglikelihood is stored in the first column) |
BURNIN |
1 |
none |
Number of samples (of the chains) to be discarded for the computation of the PDFs of the parameters. Also usedfor producing the plotmatrix figure. |
NBINS |
10 |
none |
Number of bins of the pdf histogram computed for every parameter (used again for the computation of the PDFs of the parameters) |
PLOTMATRIX |
0 |
|
Flag to determine if a plotmatrix is desired |
PDFS |
0 |
none |
Determine if a plot of the PDFs of each parameter is desired. The same as the 'CHAINS' option but for plotting the PDFs of the paramters. |
PLOT FIT CURVES |
1 |
|
Set to true to attempt to plot Gaussian fit curves to parameters histograms. |
PARAM NAMES |
[] |
none |
Cell array of names of the parameters to be assigned to each plot. If left empty the default values from the pest object will be used. If the 'NAMES' field of the pest object is empty, some default names will be used. |
SEPARATE PDFS |
[] |
none |
Optional: If the user desires only a particular set of parameters PDFs to be plotted, he must enter the vector containing these parameters. For example if the input of this field is [2 3], then only the PDFs of the 2nd and 3rd parameter are going to be plotted. The 'pdfs' field must be set to true. |
COLORPDFS |
'r-' |
none |
Choose a color for the fitted Gaussians on the PDFs. Default is red ('r-'). |
COLORMAP |
[] |
none |
Choose a colormap for the PDF histograms. By default colormaps are not used. Note: For best results it is recomended to use this option with less than 25 'NBINS'. For the available colormaps type 'doc colormap'in the terminal. |
RESULTS |
0 |
|
Set to "true" if a table of the results of the estimated parameters is desired.The results are printed on screen in 2 columns: the 1st contains the mean valueand the second the sigma. |